PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G002400.1
Common NamePHAVU_004G002400g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 80aa    MW: 9028.14 Da    PI: 7.4176
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G002400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.59.8e-11852244
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         rWT+eE + + +a + + ++   +W  Ia  +g g+t++++k ++
  Phvul.004G002400.1  8 SRWTAEENKAFERALAVHDKDtpnRWCNIAMAVG-GKTPEEVKRHY 52
                        69********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.845560IPR017884SANT domain
SMARTSM007171.2E-10658IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-6853IPR009057Homeodomain-like
SuperFamilySSF466893.96E-14864IPR009057Homeodomain-like
CDDcd001673.85E-10952No hitNo description
PfamPF002495.7E-8952IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MSSSCFSSRW TAEENKAFER ALAVHDKDTP NRWCNIAMAV GGKTPEEVKR HYDLLVEDIR  60
RIESGQVPFP TYRNLKDGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-33173174RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150886.15e-55hypothetical protein PHAVU_004G002400g
SwissprotQ58FS32e-34RAD_ANTMA; Transcription factor RADIALIS
TrEMBLV7C0Q65e-55V7C0Q6_PHAVU; Uncharacterized protein
STRINGGLYMA19G00730.21e-42(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-33RAD-like 1